Visual Molecular Dynamics (VMD) is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. For more information, see the VMD home page or its documentation and tutorials.

Use

• Open an X11 terminal.
• If VMD is installed locally on your machines (i.e., in the VisLab), type:

vmd

• Otherwise, from an DSC managed desktop (e.g., hostname is dsksc***.sc.fsu.edu) type:

qlogin -l vmd

• From all other machines first log in to pamd.sc.fsu.edu

ssh -Y pamd.sc.fsu.edu

• then type:

qlogin -l vmd

• This command logs you onto the least loaded GP node. Then type:

vmd